Lysosome Function Analysis - Selection Guide for Detection and Imaging Reagent / Probe / Kit

Science Note

[Nov. 12, 2024]                                                                                                                                                                                                                            Previous Science Note
Lysosomal Dysfunction Drives Cell Senescence and Damage

Recent research shows that lysosomal dysfunction in cells leads to toxic accumulation, causing stress responses, cell senescence and cell death. Here are some of the papers showing that lysosomal homeostasis is important for disease prevention.

Lysosomal dysfunction disrupts essential cellular processes and leads to the promotion of several diseases, including neurodegenerative diseases and senescence. In neurodegenerative diseases such as Alzheimer's and Parkinson's, impaired lysosomal activity leads to the accumulation of toxic proteins that contribute to neuronal death and disease progression. Lysosomal dysfunction is also associated with cellular senescence, where it impairs the degradation of damaged cellular components, leading to the accumulation of senescent cells and promoting age-related diseases. Therapeutic strategies targeting lysosomal function are being explored to alleviate these conditions and improve overall cellular health.

PLD3 and PLD4 synthesize S,S-BMP, a key phospholipid enabling lipid degradation in lysosomes
Click here for the original article: Shubham Singh, et. al., Cell, 2024.

Modeling Parkinson’s disease pathology in human dopaminergic neurons by sequential exposure to α-synuclein fibrils and proinflammatory cytokines
Click here for the original article: Armin Bayati, et. al., Nature Neuroscience, 2024.

HKDC1, a target of TFEB, is essential to maintain both mitochondrial and lysosomal homeostasis, preventing cellular senescence
Click here for the original article: Mengying Cui, et. al., PNAS, 2024.

Point of Interest

- PLD3 and PLD4 synthesize lysosomal S,S-bis(monoacylglycero)phosphate (BMP), which is critical for lipid degradation and brain health.

- Lysosomal S,S-BMP is essential for lipid degradation; its synthesis by PLD3/4 prevents gangliosidosis and supports cellular health.

- Mutations in PLD3 associated with neurodegenerative diseases reduce its activity, affecting S,S-BMP levels and contributing to lysosomal dysfunction.

Point of Interest

- Immune-induced lysosomal dysfunction promotes Lewy body (LB) formation in dopaminergic neurons, mimicking Parkinson's disease (PD) pathology.

- α-Synuclein fibrils and immune challenges (e.g., interferon-γ treatment) induce LD-like inclusions in iPSC-derived dopaminergic neurons.

- LB formation in PD may result from lysosomal-autophagic dysfunction, exacerbated by immune challenge and α-synuclein accumulation.

Point of Interest

- Mitochondrial and lysosomal functions are linked, with transcription factor EB (TFEB) and hexokinase domain containing 1 (HKDC1) playing critical roles in their regulation and maintenance.

- HKDC1, regulated by TFEB, is essential for mitophagy and lysosomal repair, independent of its glycolysis function.

- Loss of HKDC1 accelerates cellular senescence by causing mitochondrial hyperfusion and lysosomal damage.

Related Techniques
         Lysosomal function Lysosomal Acidic pH Detection Kit -Green/Red and Green/Deep Red
         Mitophagy  detection Mitophagy Detection Kit
         First-time autophagy research Autophagic Flux Assay Kit
         Autophagy detection DAPGreen/ DAPRed (Autophagosome detection), DALGreen (Autolysosome detection)
Cellular senescence detection SPiDER-βGal for live-cell imaging or flow cytometry / microplate reader / tissue samples
NEW SPiDER-βGal Blue for multiple staining with immunostaining and others
         Lipid Droplet Staining Lipi-Blue/ Green/ Red/ Deep Red
         Mitochondrial membrane potential detection JC-1MitoMPDetection Kit,MT-1MitoMPDetection Kit
         Glycolysis/Oxidative phosphorylation Assay Glycolysis/OXPHOS Assay KitExtracellular OCR Plate Assay Kit
         Total ROS detection Highly sensitive DCFH-DA or Photo-oxidation Resistant DCFH-DA
         Mitochondrial superoxide detection MitoBright ROS Deep Red - Mitochondrial Superoxide Detection
Related Applications

Lysosomal Function Analysis 

With existing reagents, it was difficult to determine whether lysosomal mass or their function (pH) fluctuated because the discussion was based on changes in the fluorescence brightness of a single dye. This kit contains pHLys Green, which is highly specific to lysosomes and shows pH-dependent changes in fluorescence, and pH-resistant LysoPrime Deep Red. Using these two dyes, lysosomal pH and volume of the same sample can be measured for a detailed analysis of lysosomal function.

Accurate Measurement for Lysosomal pH changes 

Existing lysosomal pH detection reagents have issues with dye localization, pH sensitivity, and retention. pHLys Green is a dye that solves these issues. The improved dye retention and localization enable detection of normal lysosomes, and the improved pH sensitivity enables detection of slight pH changes.

  1. High sensitive pH detection
Comparison of pH response of cells treated with low concentrations of lysosomal acidification inhibitor Bafilomycin A1
2. High specificity for lysosomes
Comparison of specificity for lysosomes using lysosomal marker protein LAMP1-GFP expressing cells
3. High retention in lysosomes
Comparison of intracellular retention
 

Product in Use:
   - Lysosomal Acidic pH Detection Kit-Green/Deep Red

Related Product:
   - pHLys Red- Lysosomal Acidic pH Detection

 

Why is Lysosomal Function Important?

The lysosome has been revealed to be an important organelle with a complex role in nutrient sensing and multifaceted signaling. Its importance has been emphasized in research fields as diverse as a neurological disease, cancer, immunity, and senescence.

Recent research reveals that lysosome acidification declines in neurons well before extracellular amyloid deposition, thus lysosomal function is now a hot topic in Alzheimer's disease research.


Lysosomal pH Detection Dye: pHLys Red
pHLys Red has a high sensitivity to lysosomal pH change with more precise localization, which allows slight pH changes to be detected in physiological conditions like the early phase of the disease.

 

 

Lysosomal Mass Detection Dye: LysoPrime Green, Deep Red
Dojindo’s LysoPrime Green / Deep Red more precisely detects lysosomal mass due to their unique specificity for lysosomes, and retention independent of lysosomal pH. In addition, the retention time of the dyes in lysosomes has been extended, allowing data to be acquired over time.

 

Recommended for First Time Users
Lysosomal Acidic pH Detection Kit
Two types of dyes and lysosomal pH acidification inhibitors are available as a set. Positive control is included for immediate testing in your experimental system.


- Lysosomal mass detecting dye: LysoPrime Green
- Lysosomal pH detection dye: pHLys Red
- Lysosomal pH acidification inhibitor: Bafilomycin A1


Application data

 

Endocytic vesicles were labeled by ECGreen and the lysosomal mass and pH were detected separately with LysoPrime Deep Red and pHLys Red. Co-staining with ECGreen and Lysosomal dyes showed the inhibition of endocytic vesicle-fusion induced by Bafilmycin A1.

 

We tried the simultaneous detection of lysosomal and mitochondrial dysfunction in Hela cells treated with CCCP or Antimycin (AN). CCCP and AN are well-known inducers of mitochondrial ROS regarding loss of mitochondrial membrane potential. Recent research showed the result that CCCP induces not only mitochondrial ROS but also lysosomal neutralization. To detect mitochondrial ROS, HeLa cells were labeled by MitoBright ROS Deep Red - Mitochondrial Superoxide Detection, and the lysosomal mass and pH were detected separately with LysoPrime Green and pHLys Red. Co-staining with MitoBright ROS and Lysosomal dyes demonstrated that CCCP causes lysosomal neutralization and mitochondrial ROS induction at the same time.

 

Lysosome Staining Reagents and Kits

Explore Dojindo's wide range of lysosomal staining and pH detection dyes. Choose the following kit or reagent that aligns with your experimental requirements.

Product Name
(Item Code)
Supported Devices Indicator and Detection Color Dyes and
Fluorescence Properties
Approximate Number
of Use
Lysosomal Acidic pH Detection Kit-Green/Deep Red (L268) pH pHLys Green
Ex: 488 nm / Em: 490-550 nm
[for 1 set]
35 mm dish: 10 dishes
μ-Slide 8 well: 10 plates
96-well Plate: 2 plates
quantity LysoPrime Deep Red
Ex: 633 nm / Em: 640-700 nm
Lysosomal Acidic pH Detection Kit-Green/Red (L266) Need G/Y Laser
G:532 nm
Y:561 nm
pH pHLys Red
Ex: 561 nm / Em: 560-650 nm
quantity LysoPrime Green
Ex: 488 nm / Em: 500-600 nm
pHLys Red- Lysosomal Acidic pH Detection  (L265) pH pHLys Red
Ex: 561 nm / Em: 560-650 nm
[for 1 tube]
35 mm dish: 10 dishes
μ-Slide 8 well: 10 plates
96-well Plate: 2 plates
LysoPrime Deep Red - High Specificity and pH Resistance  (L264) quantity LysoPrime Deep Red
Ex: 633 nm / Em: 640-700 nm
LysoPrime Green- High Specificity and pH Resistance  (L261) quantity LysoPrime Green
Ex: 488 nm / Em: 500-600 nm
[for 10 μl]
35 mm dish: 10 dishes
μ-Slide 8 well: 10 plates
96-well Plate: 2 plates

Product Classification

Product Classification