Lysosome Positioning Shapes Cellular Phenotypes [Dec. 9, 2025]

 

Lysosomal dysfunction is broadly linked to diseases and aging, and recent work indicates that lysosome positioning also contributes to these states. Changes in localization can influence how cells respond to stress or remodel their surrounding environment. Recent studies highlight this idea: metastatic melanoma cells shift lysosomes to the periphery to enhance invasion, while senescent cells require TIGAR-dependent perinuclear accumulation of lysosomes to maintain SASP. These findings expand the view of lysosomes beyond degradative organelles, emphasizing that their spatial organization can actively shape distinct cellular phenotypes.

1. Peripheral positioning of lysosomes supports melanoma aggressiveness (Nature Communications, 2025)

Summary: This study demonstrates that metastatic melanoma cells reposition lysosomes toward the cell periphery, a spatial reorganization that enhances lysosomal exocytosis, extracellular matrix degradation, and invasive capacity. By forcibly relocating lysosomes back to the perinuclear region, the authors show that invasiveness and metastatic behavior are significantly reduced, establishing lysosome positioning as a causal regulator of melanoma aggressiveness.

Highlighted technique: To test whether lysosome positioning influences melanoma cell behavior, the study used an FKBP–FRB dimerization system to chemically induce binding between LAMP1-tagged lysosomes and a perinuclear motor protein. This method forces lysosomes to relocate from the cell periphery to the perinuclear region, allowing the authors to assess resulting changes in invasive and metastatic behavior. Lysosome localization was visualized by tagging LAMP1 with a fluorescent protein.

 Related technique   Lysosomal Function Analysis, Cell Membrane Staining

2. TIGAR coordinates senescence-associated secretory phenotype via lysosome repositioning and α-tubulin deacetylation (Experimental & Molecular Medicine, 2024)

Summary: Senescent cells exhibit a pro-inflammatory SASP, for which proper perinuclear positioning of lysosomes is critical, but the mechanism controlling this lysosome localization had remained unclear. This study shows that TIGAR is a new key regulator that drives lysosomes to the perinuclear region, and that loss of TIGAR impairs this perinuclear repositioning and markedly reduces SASP, even though cellular senescence itself still occurs.

Highlighted technique: To clarify how TIGAR affects intracellular lysosome transport in senescent cells, lysosome localization in TIGAR knockout cells was visualized by LAMP2 immunofluorescence. Because lysosome positioning can influence autophagic flux, autophagy was additionally evaluated using both Western blot analysis of LC3 and the mRFP–GFP–LC3 reporter assay.

 Related technique   Cellular Senescence Detection, Autophagic Flux Assay

All Related Techniques (click to open/close)
Target Kit & Probes
Lysosomal function Lysosomal Acidic pH Detection Kit -Green/Red and Green/Deep Red
High Specific Lysosommal Detection LysoPrime Green / Deep Red
Lysosomal Acidic pH Detection pHLys Red
First-time autophagy research Autophagic Flux Assay Kit
Mitophagy  detection Mitophagy Detection Kit
Endocytosis Detection ECGreen-Endocytosis Detection
Cellular senescence detection SPiDER-βGal for live-cell imaging or flow cytometry / microplate reader / tissue samples
Blue cellular senescence detection dye for fixed cells,  SPiDER Blue
Application Note (click to open/close)
  > Accurate Measurement for Lysosomal pH changes

With existing reagents, it was difficult to determine whether lysosomal mass or their function (pH) fluctuated because the discussion was based on changes in the fluorescence brightness of a single dye. This kit contains pHLys Green, which is highly specific to lysosomes and shows pH-dependent changes in fluorescence, and pH-resistant LysoPrime Deep Red. Using these two dyes, lysosomal pH and volume of the same sample can be measured for a detailed analysis of lysosomal function.

 Existing lysosomal pH detection reagents have issues with dye localization, pH sensitivity, and retention. pHLys Green is a dye that solves these issues. The improved dye retention and localization enable detection of normal lysosomes, and the improved pH sensitivity enables detection of slight pH changes.
1. High sensitive pH detection
Comparison of pH response of cells treated with low concentrations of lysosomal acidification inhibitor Bafilomycin A1
2. High specificity for lysosomes
Comparison of specificity for lysosomes using lysosomal marker protein LAMP1-GFP expressing cells
3. High retention in lysosomes
Comparison of intracellular retention

Product in Use:
   - Lysosomal Acidic pH Detection Kit-Green/Deep Red

Related Product:
   - Lysosomal Acidic pH Detection Kit-Green/Red
   - LysoPrime Deep Red - High Specificity and pH Resistance
   - pHLys Red - Lysosomal Acidic pH Detection

 

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